Table 3 The data filtering statistics of RNA-Seq data from NSCLC and control EVs
Type | ADC | SQCC | CTRL | |||
|---|---|---|---|---|---|---|
Count | Percent (%) | Count | Percent (%) | Count | Percent (%) | |
Total reads | 41,609,790 | 100 | 36,662,475 | 100 | 45,042,122 | 100 |
3′adapter NULL | 796,544 | 1.91 | 736,542 | 2.01 | 923,352 | 2.05 |
Insert NULL | 406,921 | 0.98 | 97,794 | 0.27 | 4,748,412 | 10.54 |
5′adapter contaminants | 23,913 | 0.06 | 10,567 | 0.03 | 178,076 | 0.40 |
Removed inferior quality | 202,479 | 0.49 | 169,470 | 0.46 | 268,256 | 0.60 |
Smaller than 17Â nt | 1,482,425 | 3.56 | 1,033,392 | 2.82 | 1,843,389 | 4.09 |
Poly-A/T/C/G/N | 6266 | 0.02 | 6794 | 0.02 | 39,603 | 0.09 |
Clean reads | 38,691,242 | 92.99 | 34,607,916 | 94.40 | 37,041,034 | 82.24 |