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Table 3 CRISPR-Cas9 mediated genome editing in plants

From: Plant genome editing with TALEN and CRISPR

Plant species

Target gene

Modification

Reference

Arabidopsis

PDS3, FLS2, RACK1b, RACK1c

NHEJ

[96]

Arabidopsis

BRI1, GAI, JAZ1

NHEJ

[149, 150]

Arabidopsis

CHLI1, CHLI2, TT4, AP1, GL2

NHEJ

[150152]

Arabidopsis

GFP (transgene)

NHEJ

[153, 154]

Arabidopsis

ADH1, TT4, RTEL, GUS (transgene)

NHEJ, HDR

[85, 86]

Arabidopsis

FT, SPL4

NHEJ

[155]

Arabidopsis

ABP1

NHEJ

[71]

Arabidopsis

Cru3

NHEJ

[156]

Arabidopsis

TRY, CPC, ETC2, CHIL1, CHIL2

NHEJ

[79, 157]

Arabidopsis

1g03180, 1g16210, 1g56650, 5g55580

NHEJ

[80]

Arabidopsis

05g55580, 1g56650, 1g03180, 1g16210

NHEJ

[80]

Arabidopsis

PHYB, BRI1

NHEJ

[123]

Arabidopsis

BRI1, PDS3

NHEJ

[158]

Arabidopsis

PYR1, PYL1, PYL2, PYL4, PYL5, PYL8

NHEJ

[82]

Arabidopsis

SH3P3

NHEJ

[159]

Arabidopsis

eIF(iso)4E

NHEJ

[57]

Arabidopsis

CBF1, CBF2, CBF3

NHEJ

[63, 160]

Arabidopsis

DM2

NHEJ

[161]

Arabidopsis

UGT79B2, UGT79B3

NHEJ

[162]

Arabidopsis

CWIN1

NHEJ

[163]

Arabidopsis

MIR169a, MIR827a, TFL1

NHEJ, HDR

[77]

Arabidopsis

TTG1

NHEJ

[164]

Barley

HvPM19

NHEJ

[165]

Cabbage

BoIC.GA4.a

NHEJ

[165]

Camelina

FAD2

NHEJ

[69, 70]

C. reinhardtii

CpFTSY, ZEP

NHEJ

[166]

Cotton

GFP (transgene)

NHEJ

[167]

Cotton

MYB25-like A, MYB25-like D

NHEJ

[67]

Cotton

CLA1, VP

NHEJ

[68]

Dandelion

1-FFT

NHEJ

[168]

Flax

EPSPS, BFP (transgene)

NHEJ, HDR

[169]

Grape

IdnDH

NHEJ

[170]

Lettuce

BIN2

NHEJ

[123]

Liverwort

ARF1

NHEJ

[171]

Lotus japonicus

SYMRK, LjLb1, LjLb2, LjLb3

NHEJ

[172]

Maize

IPK

NHEJ

[139]

Maize

LIG1, Ms26, Ms45, ALS1, ALS2

NHEJ, HDR

[173]

Maize

PSY1, and other 90 loci

NHEJ

[174]

Maize

ZB7, 2g332562, 2g080129, 2g099580, 2g170586, 2g438243,

NHEJ

[175]

Maize

ARGOS8

NHEJ

[176]

Maize

AGO18a, Ago18b, a1, a4

NHEJ

[177]

Moss

PpAPT

NHEJ, HDR

[178]

Moss

PpKAI2L, PpAP2/ERF

NHEJ

[179]

N. oceanica

NR

NHEJ

[180]

N. attenuata

AOC

NHEJ

[123, 159]

N. benthamiana

PDS3

NHEJ, HDR

[96]

N. benthamiana

PDS

NHEJ

[181183]

N. benthamiana

PCNA, PDS

NHEJ

[60]

N. benthamiana

FLS2, BAK1

NHEJ

[81]

N. benthamiana

PDS, blspH

NHEJ

[184]

N. benthamiana

XT1, XT2

NHEJ

[185]

N. benthamiana

EDS1a, PAD4

NHEJ

[161]

N. tabacum

GFP (transgene)

NHEJ

[153]

N. tabacum

PDS, PDR6

NHEJ

[186]

N. tabacum

mCherry (transgene)

NHEJ

[187]

Petunia

PDS

NHEJ

[188]

Petunia

NR

NHEJ

[189]

Populus

4CL1, 4CL2, 4CL5

NHEJ

[64]

Populus

PDS

NHEJ

[190, 191]

Potato

IAA2

NHEJ

[192]

Potato

ALS

NHEJ

[142, 193]

Potato

GBSS

NHEJ

[194]

Potato

MYB44

NHEJ

[195]

Rice

PDS, BADH2, MPK2, 02g23823

NHEJ

[65, 83]

Rice

MPK5

NHEJ

[196]

Rice

ROC5, SPP, YSA

NHEJ

[149, 197]

Rice

MYB1

NHEJ

[151, 197]

Rice

DERF1, EPSPS, MSH1, PDS, PMS3

NHEJ

[197]

Rice

SWEET11

NHEJ

[198]

Rice

SWEET11, SWEET14

NHEJ

[153]

Rice

CAO1, LAZY1

NHEJ

[199]

Rice

BEL

NHEJ

[200]

Rice

SWEET11, SWEET13, SWEET1a, SWEET1b, CPS4, CYP99A2, CYP76M5, CYP76M6, KO1, KOL5

NHEJ

[76]

Rice

CDKA2, CDKB1, CDKB2

NHEJ

[201]

Rice

MPK1, MPK2, MPK5, MPK6, PDS

NHEJ

[202]

Rice

ALS

HDR

[97, 98]

Rice

GSTU, MRP15, ANP, WAXY, 7 FTL genes, and 21 other genes

NHEJ

[80]

Rice

AOX1a, AOX1b, AOX1c, BEL

NHEJ

[203]

Rice

DsRed (transgene), YSA, PDS, DL

NHEJ

[204, 205]

Rice

P450, DWD1

NHEJ

[123]

Rice

RAV2

NHEJ

[78]

Rice

DMC1A, DMC1B

NHEJ

[87]

Rice

NAL1, LPA1, LG1, GL1-1

NHEJ

[206]

Rice

DEP1, ROC5

NHEJ

[207]

Rice

Gn1a, DEP1, GS3, IPA1

NHEJ

[53]

Rice

ERF922

NHEJ

[56]

Rice

OST2

NHEJ

[208]

Rice

CSA

NHEJ

[54]

Rice

RUPO

NHEJ

[209]

Rice

EPSPS

NHEJ, HDR

[210]

Rice

TMS5

NHEJ

[55]

Rice

PMR

NHEJ

[211]

Rice

MEGs, PEGs

NHEJ

[212]

Rice

Hd2, Hd4, Hd5

NHEJ

[213]

Rice

SBEI, SBEIIB

NHEJ

[214]

Rice

ACT, GST

HDR

[99]

Rice

RBOHH

NHEJ

[215]

Rice

EPFL9

NHEJ

[116]

Salvia miltiorrhiza

CPS1

NHEJ

[216]

Sorghum

DsRED2 (transgene)

NHEJ

[153]

Soybean

GFP (transgene), 07g14530, 01g38150, 11g07220, miR1514, miR1509

NHEJ

[217]

Soybean

06g14180, 08g02290, 09g00490, 12g37050

NHEJ

[218]

Soybean

PDS11, PDS18

NHEJ

[147]

Soybean

DD20, DD43, ALS

NHEJ, HDR

[219]

Soybean

FEI1, FEI2, SHR, bar (transgene)

NHEJ

[220]

Soybean

Rj4

NHEJ

[72]

Sweet orange

PDS

NHEJ

[221]

Sweet orange

LOB1

NHEJ

[222]

Tomato

SHR, GFP (transgene)

NHEJ

[223]

Tomato

AGO, 08g041770, 07g021170, 12g044760

NHEJ

[224]

Tomato

RIN

NHEJ

[225]

Tomato

PDS, PIF4

NHEJ

[226]

Tomato

SIAGL6

NHEJ

[227]

Tomato

SP5G

NHEJ

[228]

Tomato

SIBOP

NHEJ

[229]

Tomato

SIIAA9

NHEJ

[230]

Tomato

MLO

NHEJ

[231]

Wheat (common)

MLO

NHEJ

[7, 65]

Wheat (common)

INOX

NHEJ

[183]

Wheat (common)

GASR7, GW2, DEP1, NAC2, PIN1, LOX2,

NHEJ

[66]

Wheat (common)

Ubi, MLO

HDR

[100]

Wheat (Durum)

GASR7

NHEJ

[66]