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Table 4 Transcripts specifically highly expressed at H. avenae parasitic stages (except adult female) with NR hits (Blastx, E value <1e−5)

From: Comparative analysis of pre- and post-parasitic transcriptomes and mining pioneer effectors of Heterodera avenae

CCN contig

Log2(FC)

Q value

Hit accession

Description [species]

E value

Ident (%)

isotig13402

6.89

3.35E−134

YP_009029999

NS5-like protein [Jingmen tick virus]

3.00E−91

31

isotig13435

6.53

1.72E−127

ACF19855

ANT-34 [Toxocara canis]

6.00E−48

32

isotig14470

5.78

1.09E−07

WP_014934453

50S ribosomal protein L25/general stress protein Ctc [Cardinium endosymbiont of Encarsia pergandiella]

1.00E−86

74

isotig12660

5.12

2.24E−05

WP_068700363

Glycoside hydrolase [Paenibacillus yonginensis]

1.00E−26

45

isotig15541

4.98

1.88E−08

EMG48930

Hypothetical protein G210_0425 [Candida maltosa Xu316]

0.003

29

isotig17002

4.94

3.26E−08

WP_011271320

Heat-shock protein C2 [Rickettsia felis]

1.00E−41

55

isotig19536

4.94

6.67E−05

WP_034577564

Preprotein translocase subunit SecE [Cardinium endosymbiont of Bemisia tabaci]

8.00E−25

77

isotig19691

4.84

1.15E−04

XP_002672706

Predicted protein [Naegleria gruberi]

5.00E−33

48

isotig15266a

4.73

1.99E−04

XP_015393075

PREDICTED: cuticle protein 12.5-like [Panthera tigris altaica]

1.00E−16

41

isotig18086

4.49

6.12E−04

ACF19853

ANT-5 [Toxocara canis]

1.00E−38

51

isotig20036

4.49

6.12E−04

KNA02486

Hypothetical protein PVNG_03779 [Plasmodium vivax North Korean]

5.00E−12

77

isotig14974

3.61

7.60E−04

WP_034577458

Transcription termination/antitermination protein NusA [Cardinium endosymbiont of Bemisia tabaci]

0

76

isotig16565

2.92

2.52E−07

KFH65214

Hypothetical protein MVEG_08695 [Mortierella verticillata NRRL 6337]

1.00E−22

45

isotig16605

2.73

2.34E−05

WP_014934894

50S ribosomal protein L20 [Cardinium endosymbiont of Encarsia pergandiella]

1.00E−55

87

isotig14490

2.54

5.90E−07

XP_005705008

DNA-directed RNA polymerase subunit alpha [Galdieria sulphuraria]

4.00E−58

45

isotig16931

1.72

5.88E−04

WP_014934892

Translation initiation factor IF-3 [Cardinium endosymbiont of Encarsia pergandiella]

4.00E−82

77

  1. a With signal peptides. Log2 (FC) = normalized Log2(post-parasitic RPKM/pre-parasitic RPKM). Both Log2 (FC) and Q value threshold (Storey et al. [44]) were calculated by DEGseq. NR means non-redundant GenBank proteins database
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Cell & Bioscience

ISSN: 2045-3701

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