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Table 3 Nucleotide substitutions by long-PCR amplification in HPV58 isolates create or inactivate restriction enzyme digestion sites

From: Genome sequencing accuracy by RCA-seq versus long PCR template cloning and sequencing in identification of human papillomavirus type 58

  

Sample number

Enzyme

nt position*

9

10

13

AfeI

1167

+

-

-

FspI

2860

-

-

+

DraIII (inactive)

2925

+

-

-

FspI

3940

+

-

-

EcoRV

5095

-

+

-

BstXI

5556

+

-

-

MscI (inactive)

6352

+

-

-

EaeI

6352

+

-

-

  1. Summarized in this table are distinguishable restriction enzyme cutting sites due to nucleotide substitutions introduced by long PCR amplification in three HPV58 isolates. See other details from Figure 3 legends. *The numbers are nucleotide positions with the substitutions to the reference HPV58 genome.