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Table 2 Nucleotide insertion and deletion created by long-PCR amplification in HPV58 isolates

From: Genome sequencing accuracy by RCA-seq versus long PCR template cloning and sequencing in identification of human papillomavirus type 58

 

Insertion

Deletion

 

Sample 9

Sample 10

Sample 13

Sample 9

Sample 10

Sample 13

at nt

S1

S2

S1

S2

S1

S2

S1

S2

S1

S2

S1

S2

2153

A

           

2253

  

T

         

2265

A

 

A

         

3081

        

T

   

3083

AA

           

3083

       

A

    

3767

 

TT

          

4460

    

CC

       

5632

     

T

      

Total

4

2

2

0

2

1

0

1

1

0

0

0

  1. Summarized in this table are nucleotide insertions/deletions introduced by long PCR amplification from the two individual clones in each of three HPV58 isolates. S1 and S2 denotes Sanger sequence #1 (clone #1) and #2 (clone #2), respectively. Numbers are nucleotide positions in the reference HPV58 genome at where the insertion or deletion was identified in each HPV58 isolate.