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Table 2 Categorization and summary of abundance of RNA-Seq tags in two libraries (control and ABA treated)

From: Transcriptome profiling identifies ABA mediated regulatory changes towards storage filling in developing seeds of castor bean (Ricinus communis L.)

Summary

Control

ABA

Total tags (raw tags)

4825495

4895913

Clean tags

4601620

4670041

Tags mapped to gene

1914805 (41.6%)

2344576 (50.2%)

Unique tags mapped to gene

1849271 (40.1%)

2310867 (49.4%)

Tags mapped to genome

2195481 (47.7%)

1967523 (42.1%)

Unknown tags

491334 (10.6%)

357942 (7.66%)

  1. Clean tags are tags that remained after filtering out dirty tags (low quality tags) from raw data.