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Table 5 CDSs involved in flagella biosynthesis in L. hongkongensis genome

From: Transport genes and chemotaxis in Laribacter hongkongensis: a genome-wide analysis

CDS

Gene

Product

Organism with the closest matching sequences

E-value

Identities

Clustera

LHK_00436

flgL

flagellar hook-associated protein 3

L. nitroferrum

1e-59

127/312 (40%)

FA

LHK_00437

flgK

flagellar hook-associated protein FlgK

L. nitroferrum

1e-109

258/634 (40%)

FA

LHK_00438

flgJ

flagellar rod assembly protein/muramidase FlgJ

L. nitroferrum

3e-68

144/296 (48%)

FA

LHK_00439

flgI

flagellar basal body P-ring protein

C. violaceum

1e-95

197/294 (67%)

FA

LHK_00440

flgH

flagellar L-ring protein

L. nitroferrum

4e-60

122/231 (52%)

FA

LHK_00441

flgG

flagellar basal-body rod protein FlgG

Ralstonia pickettii

2e-92

162/260 (62%)

FA

LHK_00442

flgF

flagellar basal-body rod protein FlgF

L. nitroferrum

1e-75

143/246 (58%)

FA

LHK_00443

flgE

flagellar basal body FlaE domain-containing protein

Pseudomonas putida

4e-76

212/598 (35%)

FA

LHK_00444

flgD

flagellar hook capping protein

L. nitroferrum

8e-38

88/240 (36%)

FA

LHK_00445

flgC

flagellar basal-body rod protein flgC

C. violaceum

2e-49

92/136 (67%)

FA

LHK_00446

flgB

flagellar basal-body rod protein FlgB

L. nitroferrum

2e-41

89/136 (65%)

FA

LHK_00584

flgN

FlgN family protein

C. violaceum

2e-15

48/131 (36%)

FB

LHK_00585

flgM

anti-sigma-28 factor, FlgM

L. nitroferrum

4e-09

36/59 (61%)

FB

LHK_00586

flgA

flagella basal body P-ring formation protein FlgA

L. nitroferrum

2e-36

85/206 (41%)

FB

LHK_00781

fliA

RNA polymerase sigma factor for flagellar operon

C. violaceum

5e-89

165/242 (68%)

FC

LHK_00782

fleN

flagellar synthesis regulator FleN

L. nitroferrum

3e-49

121/268 (45%)

FC

LHK_00783

flhF

flagellar biosynthesis regulator FlhF

C. violaceum

1e-119

250/504 (49%)

FC

LHK_00784

flhA

flagellar biosynthesis protein FlhA

L. nitroferrum

0

519/682 (76%)

FC

LHK_00785

flhB

flagellar biosynthetic protein FlhB

L. nitroferrum

2e-136

226/378 (59%)

FC

LHK_02206

motB

OmpA/MotB domain protein

L. nitroferrum

6e-111

206/273 (75%)

FD

LHK_02207

motA

flagellar motor protein MotA

L. nitroferrum

9e-123

213/286 (74%)

FD

LHK_02348

fliR

flagellar biosynthetic protein FliR

L. nitroferrum

1e-60

142/258 (55%)

FE

LHK_02349

fliQ

flagellar biosynthetic protein FliQ

L. nitroferrum

6e-24

65/89 (73%)

FE

LHK_02350

 

GCN5-related N-acetyltransferase

Methylocella silvestris

5e-09

47/150 (31%)

FE

LHK_02351

fliP

flagellar biosynthesis protein FliP

C. violaceum

7e-95

178/252 (70%)

FE

LHK_02352

fliO

flagellar protein FliO

C. violaceum

2e-16

52/100 (52%)

FE

LHK_02353

fliN

flagellar motor switch protein FliN

L. nitroferrum

2e-54

111/140 (79%)

FE

LHK_02354

fliM

flagellar motor switch protein FliM

L. nitroferrum

3e-160

272/327 (83%)

FE

LHK_02355

fliL

flagellar fliL transmembrane protein

C. violaceum

2e-28

64/136 (47%)

FE

LHK_02356

fliK

flagellar hook-length control protein

Nitrosomonas europaea

5e-18

41/108 (37%)

FE

LHK_02357

fliJ

flagellar export protein FliJ

L. nitroferrum

3e-20

64/142 (45%)

FE

LHK_02358

fliI

flagellar protein export ATPase FliI

L. nitroferrum

0

331/453 (73%)

FE

LHK_02359

fliH

flagellar assembly protein FliH

L. nitroferrum

8e-32

109/275 (39%)

FE

LHK_02360

fliG

flagellar motor switch protein FliG

L. nitroferrum

2e-148

261/332 (78%)

FE

LHK_02361

fliF

flagellar M-ring protein FliF

L. nitroferrum

0

339/585 (57%)

FE

LHK_02362

fliE

flagellar hook-basal body complex subunit FliE

L. nitroferrum

5e-27

69/110 (62%)

FE

LHK_02363

 

two component, sigma54 specific, transcriptional regulator, Fis family

L. nitroferrum

2e-143

279/450 (62%)

FE

LHK_02703

fliD

flagellar hook-associated 2 domain protein

L. nitroferrum

5e-45

136/445 (30%)

FF

LHK_02704

flaG

FlaG flagellar protein

Janthinobacterium sp. Marseille

2e-11

38/105 (36%)

FF

LHK_02705

fliC

flagellin domain-containing protein

Acidovorax sp.

2e-73

159/288 (55%)

FF

  1. aThe flagellar proteins were arranged in six gene clusters, FA, FB, FC, FD, FE and FF (flagellar A, B, C, D, E and F clusters)