Table 4 CDSs related to chemotaxis in L. hongkongensis genome
From: Transport genes and chemotaxis in Laribacter hongkongensis: a genome-wide analysis
CDS | Gene | Product | Organism with the closest matching sequences | E-value | Identities | Clustera |
|---|---|---|---|---|---|---|
LHK_00115 | Â | histidine kinase, HAMP region: chemotaxis sensory transducer | D. aromatica | 1e-96 | 242/680 (35%) | Â |
LHK_00482 | Â | methyl-accepting chemotaxis sensory transducer | L. nitroferrum | 4e-55 | 164/543(30%) | Â |
LHK_00516 | Â | methyl-accepting chemotaxis sensory transducer | L. nitroferrum | 8e-129 | 265/513 (51%) | Â |
LHK_00553 | Â | diguanylate phosphodiesterase | C. violaceum | 6e-111 | 211/406 (51%) | CA |
LHK_00554 | cheA1 | CheA signal transduction histidine kinase | L. nitroferrum | 0 | 443/613 (72%) | CA |
LHK_00555 | cheZ1 | chemotaxis phosphatase, CheZ | L. nitroferrum | 2e-69 | 139/244(59%) | CA |
LHK_00556 | cheY1 | chemotaxis regulator protein CheY | C. violaceum | 4e-61 | 109/130 (83%) | CA |
LHK_00557 | cheV1 | chemotaxis protein CheV | C. violaceum | 1e-138 | 240/314 (76%) | CA |
LHK_00558 | cheV2 | chemotaxis protein CheV | C. violaceum | 5e-147 | 251/313 (80%) | CA |
LHK_00559 | Â | two-component sensor histidine kinase | L. nitroferrum | 2e-59 | 169/381 (44%) | CA |
LHK_00560 | Â | chemotaxis sensory transducer | D. aromatica | 6e-24 | 100/320 (31%) | CA |
LHK_00561 | cheY2 | chemotaxis protein cheY | D. aromatica | 8e-46 | 85/121 (70%) | CA |
LHK_00562 | cheA2 | chemotaxis protein CheA | C. violaceum | 2e-161 | 358/746 (47%) | CA |
LHK_00563 | cheW | CheW protein | Burkholderia phytofirmans | 1e-40 | 95/153 (62%) | CA |
LHK_00564 | Â | methyl-accepting chemotaxis protein | C. violaceum | 4e-143 | 315/475 (66%) | CA |
LHK_00565 | cheR | CheR chemotaxis protein methyltransferase | Janthinobacterium sp. Marseille | 5e-68 | 125/273 (45%) | CA |
LHK_00566 | cheB1 | chemotaxis-specific methylesterase | Nitrosomonas europaea | 2e-99 | 186/355 (52%) | CA |
LHK_00567 | cheD | chemoreceptor glutamine deamidase CheD | D. aromatica | 5e-59 | 108/189 (57%) | CA |
LHK_00603 | Â | methyl-accepting chemotaxis protein | C. violaceum | 7e-103 | 242/624 (38%) | Â |
LHK_00617 | Â | methyl-accepting chemotaxis protein IV | C. violaceum | 2e-100 | 223/481 (46%) | Â |
LHK_00700 | Â | methyl-accepting chemotaxis sensory transducer | Allochromatium vinosum | 0 | 384/715 (53%) | Â |
LHK_00726 | aer1 | methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor | L. nitroferrum | 7e-114 | 232/528 (43%) | Â |
LHK_00935 | cheR | MCP methyltransferase, CheR-type | L. nitroferrum | 2e-92 | 170/282 (60%) | Â |
LHK_01020 | Â | putative aromatic hydrocarbon chemotaxis transducer | Azoarcus sp. | 4e-62 | 140/338 (41%) | Â |
LHK_01116 | Â | methyl-accepting chemotaxis protein | Denitrovibrio acetiphilus | 1e-59 | 152/461 (32%) | Â |
LHK_01212 | Â | methyl-accepting chemotaxis sensory transducer | L. nitroferrum | 1e-135 | 261/476 (54%) | Â |
LHK_01359 | cheY3 | chemotaxis regulator protein CheY | C. violaceum | 1e-56 | 102/127 (80%) | CB |
LHK_01360 | cheV3 | chemotaxis protein CheV | C. violaceum | 1e-134 | 231/309 (74%) | CB |
LHK_01361 | Â | methyl-accepting chemotaxis sensory transducer | L. nitroferrum | 6e-47 | 157/506 (31%) | CB |
LHK_01372 | Â | chemotaxis sensory transducer | D. aromatica | 4e-49 | 166/534 (31%) | Â |
LHK_01470 | Â | putative aromatic hydrocarbon chemotaxis transducer | Azoarcus sp. | 2e-93 | 222/539 (41%) | Â |
LHK_01602 | Â | methyl-accepting chemotaxis sensory transducer | L. nitroferrum | 0 | 339/601 (56%) | Â |
LHK_01618 | Â | methyl-accepting chemotaxis sensory transducer | L. nitroferrum | 2e-87 | 209/525 (39%) | Â |
LHK_01706 | Â | methyl-accepting chemotaxis protein IV | C. violaceum | 1e-121 | 247/481 (51%) | Â |
LHK_01721 | Â | methyl-accepting chemotaxis protein | C. violaceum | 4e-113 | 240/627 (38%) | Â |
LHK_02037 | Â | methyl-accepting chemotaxis sensory transducer | Leptospirillum ferrodiazotrophum | 5e-63 | 137/327 (41%) | Â |
LHK_02158 | aer2 | methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor | Ralstonia pickettii | 6e-39 | 98/276 (35%) | Â |
LHK_02165 | Â | methyl-accepting chemotaxis protein | C. violaceum | 8e-146 | 275/631 (43%) | Â |
LHK_02364 | cheB2 | response regulator receiver modulated CheB methylesterase | Geobacter bemidjiensis | 1e-63 | 122/206 (59%) | Â |
LHK_02427 | Â | methyl-accepting chemotaxis protein | C. violaceum | 6e-110 | 227/629 (36%) | CC |
LHK_02428 | Â | Hypothetical protein | No | Â | Â | CC |
LHK_02429 | cheV4 | response regulator receiver modulated CheW protein | L. nitroferrum | 2e-145 | 248/313 (79%) | CC |
LHK_02430 | cheV5 | chemotaxis protein CheV | C. violaceum | 3e-137 | 237/314 (75%) | CC |
LHK_02431 | cheY4 | chemotaxis regulator protein CheY | C. violaceum | 2e-58 | 105/127 (82%) | CC |
LHK_02432 | cheZ2 | chemotaxis phosphatase, CheZ | L. nitroferrum | 2e-63 | 129/248 (52%) | CC |
LHK_02433 | cheA3 | CheA signal transduction histidine kinase | L. nitroferrum | 0 | 420/611 (68%) | CC |
LHK_02455 | Â | methyl-accepting chemotaxis sensory transducer | Candidatus Accumulibacter phosphates | 1e-74 | 154/326 (47%) | Â |
LHK_02575 | Â | putative Methyl-accepting or sensory transducer chemotaxis protein | Alteromonadales bacterium | 1e-83 | 172/407 (42%) | Â |
LHK_02814 | aer3 | chemotaxis sensory transducer | Rhodopseudomonas palustris | 8e-42 | 138/425 (32%) | Â |
LHK_02834 | Â | methyl-accepting chemotaxis protein | Pseudomonas syringae | 1e-45 | 148/437 (33%) | Â |
LHK_03026 | Â | methyl-accepting chemotaxis protein | C. violaceum | 6e-145 | 275/627 (43%) | Â |
LHK_03119 | Â | methyl-accepting chemotaxis sensory transducer | L. nitroferrum | 2e-133 | 273/514 (53%) | Â |
LHK_03163 | Â | methyl-accepting chemotaxis sensory transducer | Candidatus Accumulibacter phosphatis | 9e-50 | 167/494 (33%) | Â |